| Day 1 |
2020-07-27
Introduction to Single-Cell RNA-seq |
|
| 12:00 PM |
Welcome, Introductions, and Getting Started
Workshop Intro Slides (pdf) |
Zoom: Main Session |
| 1:00 PM |
Intro to Single-Cell RNA-seq Slides (pdf)
scRNA-seq QC and filtering |
Zoom: Main Session |
| 1:45 PM |
Break |
|
| 2:00 PM |
scRNA-seq normalization and finding marker genes |
Zoom: Main Session |
| 3:00 PM |
Questions and introduction to the exercise:
Marker genes in single-cell data |
Zoom: Breakout Rooms |
| 3:30 PM |
Consultation session begins |
#2020-july-training Slack channel
(See Guidelines for Posting Errors to Slack) |
| 5:00 PM |
End |
|
| Day 2 |
2020-07-28
Introduction to Single-Cell RNA-seq |
|
| 12:00 PM |
Processing tag-based scRNA-seq with Alevin |
Zoom: Main Session |
| 1:00 PM |
Break |
|
| 1:15 PM |
scRNA-seq Dimension reduction |
Zoom: Main Session |
| 2:45 PM |
Break |
|
| 3:00 PM |
Questions and introduction to the exercise:
scRNA-seq Exercise 2: Here we go again! |
Zoom: Breakout Rooms |
| 3:30 PM |
Consultation session begins |
#2020-july-training Slack channel
(See Guidelines for Posting Errors to Slack) |
| 5:00 PM |
End |
|
| Day 3 |
2020-07-29
Introduction to Pathway Analysis |
|
| 12:00 PM |
Introduction to Pathway Analysis Slides (pdf) |
Zoom: Main Session |
| 12:15 PM |
Pathway analysis I: Over-representation analysis |
Zoom: Main Session |
| 1:00 PM |
Break |
|
| 1:15 PM |
Pathway analysis II: Gene Set Enrichment Analysis |
Zoom: Main Session |
| 2:00 PM |
Break |
|
| 2:15 PM |
Pathway analysis III: Gene Set Variation Analysis |
Zoom: Main Session |
| 3:00 PM |
Questions and introduction to the exercise:
Pathway analysis of Medulloblastoma PDX |
Zoom: Breakout Rooms |
| 3:30 PM |
Consultation session begins |
#2020-july-training Slack channel
(See Guidelines for Posting Errors to Slack) |
| 5:00 PM |
End |
|
| Day 4 |
2020-07-30
Introduction to Machine Learning |
|
| 12:00 PM |
Introduction to Machine Learning Slides (pdf) |
Zoom: Main Session |
| 12:15 PM |
Machine learning I: Clustering & heatmaps |
Zoom: Main Session |
| 12:45 PM |
Break |
|
| 12:50 PM |
Machine learning II: Cluster validation |
Zoom: Main Session |
| 1:20 PM |
Break |
|
| 1:30 PM |
Machine learning III: Pathway-Level Information ExtractoR |
Zoom: Main Session |
| 2:15 PM |
Break |
|
| 2:30 PM |
Machine learning IV: Plotting latent variables |
Zoom: Main Session |
| 3:00 PM |
Questions and introduction to the exercise:
Exploring drug exposure in the NCI-60 cell lines |
Zoom: Breakout Rooms |
| 3:30 PM |
Consultation session begins |
#2020-july-training Slack channel
(See Guidelines for Posting Errors to Slack) |
| 5:00 PM |
End |
|
| Day 5 |
2020-07-31
Consultation and Presentations |
|
| 12:00 PM |
Consultation session begins |
#2020-july-training Slack channel
(See Guidelines for Posting Errors to Slack) |
| 2:30 PM |
Participant presentations begin |
Zoom: Main Session |
| 5:00 PM |
Adjourn |
|