The schedule for the June 2020 CCDL Virtual Training Workshop appears below.

Note: All times are EDT (UTC−04:00)

Time Topic Location
Day 1 2020-06-22
Introduction to R and the Tidyverse		  
12:00 Welcome, Introductions and Getting Started
Workshop Intro Slides (pdf)		 Zoom: Main Session
1:00 Introduction to base R
Intro to RStudio Slides (pdf)		 Zoom: Main Session
3:00 Questions and introduction to the exercise:
Introduction to R Exercise		 Zoom: Breakout Rooms
3:30 Consultation session begins #2020-june-training Slack channel
5:00 End  
Day 2 2020-06-23
Introduction to R and the Tidyverse		  
12:00 Introduction to ggplot2 Zoom: Main Session
  Introduction to the Tidyverse Zoom: Main Session
3:00 Questions and introduction to the exercises:
Introduction to R Exercise
Introduction to the Tidyverse Exercise - Part 1
Introduction to the Tidyverse Exercise - Part 2		 Zoom: Breakout Rooms
3:30 Consultation session begins #2020-june-training Slack channel
5:00 End  
Day 3 2020-06-24
Introduction to Bulk RNA-seq		  
12:00 Bulk RNA-seq I: QC, trim, and quantification with Salmon
Intro to Bulk RNA-seq Slides (pdf)		 Zoom: Main Session
1:30 Bulk RNA-seq II: Gene-Level Summaries with tximport Zoom: Main Session
2:30 Bulk RNA-seq III: Exploratory Analyses Zoom: Main Session
3:00 Questions and introduction to the exercise:
Exploratory Data Analysis		 Zoom: Breakout Rooms
3:30 Consultation session begins #2020-june-training Slack channel
5:00 End  
Day 4 2020-06-25
Introduction to Bulk RNA-seq		  
12:00 Guided Exercise: Neuroblastoma Cell Line tximport Zoom: Breakout Rooms (meet in main session to begin)
1:30 Bulk RNA-seq IV: Differential Expression Analysis Zoom: Main Session
3:00 Questions and introduction to the exercise:
Bulk RNA-seq Exercise		 Zoom: Breakout Rooms
3:30 Consultation session begins #2020-june-training Slack channel
5:00 End  
Day 5 2020-06-36
Consultation and Presentations		  
12:00 Consultation session begins #2020-june-training Slack channel
2:30 Presentations begin Zoom: Main Session
5:00 Adjourn