A schedule for the September 2021 CCDL Virtual Training Workshop appears below.

Note: All times are EDT (UTC−04:00)

Time Topic Location
Day 1 2021-09-20
Introduction to R and the Tidyverse		  
12:00 PM Welcome, Introductions and Getting Started
Intro slides (pdf)		 Zoom: Main Session
1:00 PM Introduction to RStudio and R (pdf)
Introduction to base R		 Zoom: Main Session
2:30 PM Introduction to ggplot2 Zoom: Main Session
3:30 PM Introduction to the tidyverse Zoom: Main Session
4:30 Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Introduction to R  
  Consultation session Slack channel
5:00 PM End  
Day 2 2021-09-21
Introduction to bulk RNA-seq, Day 1: Raw data & exploratory analysis		  
12:00 PM Bulk RNA-seq: Introduction (pdf) Zoom: Main Session
  Bulk RNA-seq: QC, trim, and quantification with Salmon Zoom: Main Session
1:00 PM Bulk RNA-seq: Gene-level summaries with tximeta Zoom: Main Session
2:00 PM Bulk RNA-seq: Exploratory analyses Zoom: Main Session
3:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Guided Exercise: Neuroblastoma cell line tximeta Zoom: Breakout Rooms
  Exercise: Exploratory data analysis  
  Consultation session Slack channel
5:00 PM End  
Day 3 2021-09-22
Bulk RNA-seq, Day 2: Differential expression and clustering		  
12:00 PM Bulk RNA-seq: Differential expression analysis Zoom: Main Session
1:30 PM Bulk RNA-seq: Heatmaps & clustering Zoom: Main Session
3:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Bulk RNA-seq  
  Consultation session Slack channel
5:00 PM End  
Day 4 2021-09-23
Introduction to Pathway Analysis		  
12:00 PM Pathway Analysis: Introduction (pdf) Zoom: Main Session
12:30 PM Pathway analysis: Over-representation analysis Zoom: Main Session
1:30 PM Pathway analysis: Gene Set Enrichment Analysis Zoom: Main Session
2:30 PM Pathway analysis: Gene Set Variation Analysis Zoom: Main Session
3:30 PM Questions and introduction to the exercise Zoom: Breakout Rooms
  Exercises: Pathway analysis
ORA
GSEA
GSVA
Zoom: Breakout Rooms
  Consultation session Slack channel
5:00 PM End  
Day 5 2021-09-24
Consultation and Presentations		  
12:00 PM Consultation session Slack channel
2:30 PM Participant presentations begin Zoom: Main Session
5:00 PM Adjourn