The planned schedule for the September 2022 Data Lab Virtual Training Workshop appears below.

Note: All times are EDT (UTC−04:00).

Time Topic Location
Day 1 Monday 2022-09-19
Introduction to R and the Tidyverse		  
12:00 PM Welcome, Introductions and Getting Started
Workshop Intro slides (PDF)		 Zoom: Main Session
1:00 PM Introduction to R and RStudio
Introduction to R and RStudio slides (PDF)
Introduction to base R		 Zoom: Main Session
2:30 PM Introduction to ggplot2 Zoom: Main Session
3:30 PM Introduction to the tidyverse Zoom: Main Session
4:30 Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Introduction to R  
  Consultation session Slack channel
5:00 PM End  
Day 2 Tuesday 2022-09-20
Introduction to Single-cell RNA-seq, Day 1		  
12:00 PM scRNA-seq: Introduction
Introduction to scRNA-seq slides (PDF)		 Zoom: Main Session
12:30 PM scRNA-seq: Quantification and general QC of tag-based data Zoom: Main Session
1:30 PM scRNA-seq: Importing data and filtering cells Zoom: Main Session
2:30 PM scRNA-seq: Normalization of expression data Zoom: Main Session
3:30 PM Questions and introduction to the exercise Zoom: Breakout Rooms
  Exercise: scRNA-seq quantification  
  Consultation session Slack channel
5:00 PM End  
Day 3 Wednesday 2022-09-21
Single-cell RNA-seq, Day 2		  
12:00 PM scRNA-seq: Dimension reduction & visualization
Dimension Reduction & Clustering slides (PDF)		 Zoom: Main Session
1:30 PM scRNA-seq: Clustering and marker identification Zoom: Main Session
3:00 PM Questions and introduction to the exercise Zoom: Breakout Rooms
  Exercise: scRNA-seq clustering  
  Consultation session Slack channel
5:00 PM End  
Day 4 Thursday 2022-09-22
Introduction to Pathway Analysis		  
12:00 PM Introduction to Pathway Analysis
Pathway Analysis slides (PDF)		 Zoom: Main Session
12:30 PM Pathway analysis: Over-representation analysis Zoom: Main Session
2:00 PM Pathway analysis: Gene Set Enrichment Analysis Zoom: Main Session
3:00 PM Questions and introduction to the exercise Zoom: Breakout Rooms
  Exercise: scRNA-seq pathway analysis  
  Consultation session Slack channel
5:00 PM End  
Day 5 Friday 2022-09-23
Consultation and Presentations		  
12:00 PM Consultation session Slack channel
2:30 PM Participant presentations begin Zoom: Main Session
5:00 PM Adjourn