| Day 1 |
2023-05-15
Introduction to R and the Tidyverse |
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| 12:00 PM |
Welcome, Introductions and Getting Started
Workshop introduction slides (PDF) |
Zoom: Main Session |
| 1:00 PM |
Introduction to base R
Introduction to R, RStudio, and RStudio Server slides (PDF) |
Zoom: Main Session |
| 2:30 PM |
Introduction to ggplot2 |
Zoom: Main Session |
| 3:30 PM |
Introduction to the tidyverse |
Zoom: Main Session |
| 4:30 PM |
Questions and introduction to the exercises |
Zoom: Breakout Rooms |
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Exercise: Introduction to base R |
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Exercise: Introduction to R |
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Exercise: Introduction to the tidyverse, Part 1 |
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Exercise: Introduction to the tidyverse, Part 2 |
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Consultation session and exercises |
Slack channel |
| 5:00 PM |
Adjourn for the day |
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| Day 2 |
2023-05-16
Introduction to Single-cell RNA-seq, Day 1 |
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| 12:00 PM |
Introduction
Introduction to scRNA-seq slides (PDF) |
Zoom: Main Session |
| 12:30 PM |
scRNA-seq quantification with Alevin |
Zoom: Main Session |
| 1:30 PM |
Importing data and filtering cells |
Zoom: Main Session |
| 2:30 PM |
Normalization of expression data |
Zoom: Main Session |
| 3:30 PM |
Questions and introduction to the exercise |
Zoom: Breakout Rooms |
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Exercise: scRNA-seq quantification |
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Exercise and consultation session |
Slack channel |
| 5:00 PM |
Adjourn for the day |
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| Day 3 |
2023-05-17
Introduction to Single-cell RNA-seq, Day 2 |
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| 12:00 PM |
Dimension reduction & visualization
Dimension reduction and clustering slides (PDF) |
Zoom: Main Session |
| 1:30 PM |
Clustering and marker identification |
Zoom: Main Session |
| 3:00 PM |
Questions and introduction to the exercise |
Zoom: Breakout Rooms |
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Exercise: scRNA-seq clustering |
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Exercise and consultation session |
Slack channel |
| 5:00 PM |
Adjourn for the day |
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| Day 4 |
2023-05-18
Introduction to Single-cell RNA-seq, Day 3 |
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| 12:00 PM |
Cell type annotation
Cell type annotation slides (PDF) |
Zoom: Main Session |
| 2:30 PM |
Questions and introduction to the exercise |
Zoom: Breakout Rooms |
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Exercise and consultation session |
Slack channel |
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Exercise: scRNA-seq cell type annotation |
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| 5:00 PM |
Adjourn for the day |
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| Day 5 |
2023-05-19
Consultation and Presentations |
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| 12:00 PM |
Consultation session |
Slack channel |
| 2:30 PM |
Participant presentations begin |
Zoom: Main Session |
| 5:00 PM |
Adjourn |
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