A preliminary schedule for the March 2023 CCDL Virtual Advanced scRNA-seq Training Workshop appears below.

Note: All times are EDT (UTC−04:00). Be aware that we transition(ed) to Daylight Saving Time on March 12, so relative times may have changed!

Time Topic Location
Day 1 2023-03-13  
12:00 PM Welcome, Introductions and Getting Started (PDF) Zoom: Main Session
1:00 PM Introduction/Refresher to Single-cell Analysis with R and Bioconductor  
  Single-cell Analysis with R slides (PDF)  
  Single-cell Analysis with R instruction notebook  
4:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Importing CITE-seq data  
  Consultation session
Resources		 Slack channel
5:00 PM Adjourn for the day  
     
Day 2 2023-03-14 π🥧  
12:00 PM Identifying Cell Types with scRNA-seq Data Zoom: Main Session
  Cell Typing slides (PDF)  
  Cell Typing instruction notebook  
3:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Cell type assignment  
  Consultation session
Resources		 Slack channel
5:00 PM Adjourn for the day  
     
Day 3 2023-03-15  
12:00 PM Integrating scRNA-seq Experiments Zoom: Main Session
  Integration slides (PDF)  
  Integration instruction notebook  
3:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Integration  
  Consultation session
Resources		 Slack channel
5:00 PM Adjourn for the day  
     
Day 4 2023-03-16  
12:00 PM Differential Expression Analysis with scRNA-seq Zoom: Main Session
  Differential Expression slides (PDF)  
  Differential Expression instruction notebook  
3:00 PM Questions and introduction to the exercises Zoom: Breakout Rooms
  Exercise: Differential Expression  
  Consultation session
Resources		 Slack channel
5:00 PM Adjourn for the day  
     
Day 5 2023-03-17  
12:00 PM Consultation session Slack channel
2:30 PM Participant presentations begin Zoom: Main Session
5:00 PM Adjourn