Virtual Workshop Schedule

The schedule for the June 2021 CCDL Virtual Training Workshop appears below. While we expect to start and end each day on time, the timing of individual modules may vary from what is shown.

Note: All times are EDT (UTC−04:00)

Time	Topic	Location
Day 1	2021-06-28 Introduction to R and the Tidyverse
12:00 PM	Welcome, Introductions and Getting Started Workshop Introduction slides (pdf)	Zoom: Main Session
1:00 PM	Introduction to Rstudio Server (pdf) Introduction to base R	Zoom: Main Session
2:30 PM	Introduction to ggplot2	Zoom: Main Session
3:30 PM	Introduction to the tidyverse	Zoom: Main Session
4:30	Questions and introduction to the exercises	Zoom: Breakout Rooms
	Exercise: Introduction to R
	Consultation session	Slack channel
5:00 PM	End
Day 2	2021-06-29 Introduction to Single-cell RNA-seq, Day 1
12:00 PM	scRNA-seq: Introduction (pdf)	Zoom: Main Session
12:30 PM	scRNA-seq: Quantification and general QC of tag-based data	Zoom: Main Session
1:30 PM	scRNA-seq: Importing data and filtering cells	Zoom: Main Session
2:30 PM	scRNA-seq: Normalization of expression data	Zoom: Main Session
3:30 PM	Questions and introduction to the exercise	Zoom: Breakout Rooms
	Exercise: scRNA-seq quantification
	Consultation session	Slack channel
5:00 PM	End
Day 3	2021-06-30 Single-cell RNA-seq, Day 2
12:00 PM	scRNA-seq: Dimension reduction & visualization Dimension reduction & clustering slides (pdf)	Zoom: Main Session
1:30 PM	scRNA-seq: Clustering and marker identification	Zoom: Main Session
3:00 PM	Questions and introduction to the exercise	Zoom: Breakout Rooms
	Exercise: scRNA-seq clustering
	Consultation session	Slack channel
5:00 PM	End
Day 4	2021-07-01 Introduction to Pathway Analysis
12:00 PM	Introduction to Pathway Analysis Pathway analysis slides (pdf)	Zoom: Main Session
12:30 PM	Pathway analysis: Over-representation analysis	Zoom: Main Session
2:00 PM	Pathway analysis: Gene Set Enrichment Analysis	Zoom: Main Session
3:00 PM	Questions and introduction to the exercise	Zoom: Breakout Rooms
	Exercise: scRNA-seq pathway analysis
	Consultation session	Slack channel
5:00 PM	End
Day 5	2021-07-02 Consultation and Presentations
12:00 PM	Consultation session	Slack channel
2:30 PM	Participant presentations begin	Zoom: Main Session
5:00 PM	Adjourn