Advanced scRNA-seq Workshop Schedule
The planned schedule for the Jan 31-Feb 2, 2023 Data Lab Training Workshop appears below.
Time | Topic |
---|---|
Day 1 | 2023-01-31 |
9:00 AM | Welcome, Introductions and Getting Started Workshop Introduction slides (PDF) |
10:00 AM | Introduction/Refresher to Single-cell Analysis with R and Bioconductor Single-cell Analysis with R slides (PDF) Single-cell Analysis with R instruction notebook |
11:15 AM | Coffee break |
11:30 AM | Introduction/Refresher to Single-cell Analysis, continued |
12:30 PM | Lunch |
1:30 PM | Identifying Cell Types with scRNA-seq Data Cell Typing slides (PDF) Cell Typing instruction notebook |
2:30 PM | Coffee break |
2:45 PM | Identifying Cell Types with scRNA-seq Data, continued |
4:00 PM | Exercises and Questions Exercise: Importing CITE-seq data Exercise: Cell type assignment |
5:00 PM | Adjourn for the day |
Day 2 | 2023-02-01 |
9:00 AM | Questions and Review |
9:30 AM | Integrating scRNA-seq Experiments Integration slides (PDF) Integration instruction notebook |
11:00 AM | Coffee break |
11:15 AM | Integrating scRNA-seq Experiments, continued |
12:30 PM | Lunch |
1:30 PM | Exercises, Questions, and Independent Projects Exercise: Integration Resources |
4:00 PM | Adjourn for the day |
6:30 PM | Workshop dinner: Manayunk Brewing Co. 4120 Main St Philadelphia, PA 19127 |
Day 3 | 2023-02-02 |
9:00 AM | Questions and Review |
9:30 AM | Differential Expression Analysis with scRNA-seq Differential Expression slides (PDF) Differential Expression instruction notebook |
11:00 AM | Coffee break |
11:15 AM | Differential Expression Analysis, continued |
12:30 PM | Lunch |
1:30 PM | Exercises, Questions, and Independent Projects Exercise: Differential Expression Resources |
3:00 PM | Participant Presentations! |
4:00 PM | Adjourn |